Added an include folder for the header files.

doxygen_template.conf

@@ -83,6 +83,7 @@ WARN_LOGFILE           =
 # configuration options related to the input files
 #---------------------------------------------------------------------------
 INPUT                  = ../src \
+                         ../include \
                          ../ReadMe.md
 INPUT_ENCODING         = UTF-8
 FILE_PATTERNS          = *.c \

new_project.sh

@@ -81,6 +81,15 @@ else
   echo "Creating $SRC_DIR directory"
   mkdir $SRC_DIR
 fi  
+# create the include directory
+INCLUDE_DIR="./include"
+if [ -e "$INCLUDE_DIR" ]
+then
+  echo "$INCLUDE_DIR directory already exists, skipping ..."
+else
+  echo "Creating $INCLUDE_DIR directory"
+  mkdir $INCLUDE_DIR
+fi  
 #create the src/examples directory
 if [ $TYPE = library ]
 then 
@@ -163,7 +172,7 @@ then
     echo "FIND_PACKAGE($x REQUIRED)" >> CMakeLists.tmp
   done
   echo "# add the necessary include directories" >> CMakeLists.tmp
-  echo "INCLUDE_DIRECTORIES(.)" >> CMakeLists.tmp
+  echo "INCLUDE_DIRECTORIES(../include)" >> CMakeLists.tmp
   for x in $arr
   do
     echo "INCLUDE_DIRECTORIES("'${'"${x}_INCLUDE_DIR"'}'")" >> CMakeLists.tmp
@@ -171,7 +180,7 @@ then
   echo "# application source files" >> CMakeLists.tmp
   echo "SET(sources ${NAME}.cpp)" >> CMakeLists.tmp
   echo "# application header files" >> CMakeLists.tmp
-  echo "SET(headers ${NAME}.h)" >> CMakeLists.tmp
+  echo "SET(headers ../include/${NAME}.h)" >> CMakeLists.tmp
   echo "# create the executable file" >> CMakeLists.tmp
   echo "ADD_EXECUTABLE(${NAME} "'${'"sources"'}'")" >> CMakeLists.tmp
   echo "# link necessary libraries" >> CMakeLists.tmp
@@ -185,14 +194,14 @@ else
   echo "# driver source files" >> CMakeLists.tmp
   echo "SET(sources ${NAME}.cpp)" >> CMakeLists.tmp
   echo "# application header files" >> CMakeLists.tmp
-  echo "SET(headers ${NAME}.h)" >> CMakeLists.tmp
+  echo "SET(headers ../include/${NAME}.h)" >> CMakeLists.tmp
   echo "# locate the necessary dependencies" >> CMakeLists.tmp
   for x in $arr
   do
     echo "FIND_PACKAGE($x REQUIRED)" >> CMakeLists.tmp
   done
   echo "# add the necessary include directories" >> CMakeLists.tmp
-  echo "INCLUDE_DIRECTORIES(.)" >> CMakeLists.tmp
+  echo "INCLUDE_DIRECTORIES(../include)" >> CMakeLists.tmp
   for x in $arr
   do
     echo "INCLUDE_DIRECTORIES("'${'"${x}_INCLUDE_DIR"'}'")" >> CMakeLists.tmp
@@ -230,7 +239,7 @@ else
   LIBRARY_NAME=$(echo $NAME | tr '[:lower:]' '[:upper:]')
   Library_name=$(echo $NAME | sed 's/\([a-zA-Z]\)\([a-zA-Z0-9]*\)/\u\1\2/g')
   sed 's/Library_name/'$Library_name'/g' <driver_header_template.h >tmp.h
-  sed 's/LIBRARY_NAME/'$LIBRARY_NAME'/g' <tmp.h >./src/$NAME.h
+  sed 's/LIBRARY_NAME/'$LIBRARY_NAME'/g' <tmp.h >./include/$NAME.h
   rm tmp.h
   
   sed 's/library_name/'$NAME'/g' <driver_src_template.cpp >tmp.cpp