Imported from SVN old repo

CMakeLists.txt

+# Pre-requisites about cmake itself
+CMAKE_MINIMUM_REQUIRED(VERSION 2.8)
+
+if(COMMAND cmake_policy)
+  cmake_policy(SET CMP0005 NEW) 
+  cmake_policy(SET CMP0003 NEW)
+   
+endif(COMMAND cmake_policy)
+
+# The project name and the type of project
+PROJECT(prada)
+
+SET(EXECUTABLE_OUTPUT_PATH ${CMAKE_CURRENT_SOURCE_DIR}/bin)
+SET(LIBRARY_OUTPUT_PATH ${CMAKE_CURRENT_SOURCE_DIR}/lib)
+SET(CMAKE_INSTALL_PREFIX /usr/local)
+
+IF (NOT CMAKE_BUILD_TYPE)
+ SET(CMAKE_BUILD_TYPE "Release") 
+ENDIF (NOT CMAKE_BUILD_TYPE)
+
+SET(CMAKE_CXX_FLAGS_DEBUG "-g -Wall -D_REENTRANT")
+SET(CMAKE_CXX_FLAGS_RELEASE "-O3 -D_REENTRANT")
+
+ADD_SUBDIRECTORY(include)
+ADD_SUBDIRECTORY(src)
+
+FIND_PACKAGE(Doxygen)
+
+FIND_PATH(IRI_DOC_DIR doxygen.conf ${CMAKE_SOURCE_DIR}/doc/iri_doc/)
+IF (IRI_DOC_DIR)
+  ADD_CUSTOM_TARGET (doc ${DOXYGEN_EXECUTABLE} ${CMAKE_SOURCE_DIR}/doc/iri_doc/doxygen.conf)
+ELSE (IRI_DOC_DIR)
+  ADD_CUSTOM_TARGET (doc ${DOXYGEN_EXECUTABLE} ${CMAKE_SOURCE_DIR}/doc/doxygen.conf)
+ENDIF (IRI_DOC_DIR)
+
+ADD_CUSTOM_TARGET (distclean @echo cleaning cmake files)
+
+IF (UNIX)
+  ADD_CUSTOM_COMMAND(
+    COMMENT "distribution clean"
+    COMMAND make ARGS clean
+    COMMAND rm ARGS -rf ${CMAKE_SOURCE_DIR}/build/*
+
+    TARGET  distclean
+  )
+ELSE(UNIX)
+  ADD_CUSTOM_COMMAND(
+    COMMENT "distclean only implemented in unix"
+    TARGET  distclean
+  )
+ENDIF(UNIX)
+
+ADD_CUSTOM_TARGET (uninstall @echo uninstall package)
+
+IF (UNIX)
+  ADD_CUSTOM_COMMAND(
+    COMMENT "uninstall package"
+    COMMAND xargs ARGS rm < install_manifest.txt
+
+    TARGET  uninstall
+  )
+ELSE(UNIX)
+  ADD_CUSTOM_COMMAND(
+    COMMENT "uninstall only implemented in unix"
+    TARGET  uninstall
+  )
+ENDIF(UNIX)
+
+

Findprada.cmake

+#edit the following line to add the librarie's header files
+FIND_PATH(prada_INCLUDE_DIR relational/prada.h /usr/include/libprada /usr/local/include/libprada)
+
+FIND_LIBRARY(prada_LIBRARY
+    NAMES prada
+    PATHS /usr/lib /usr/local/lib /usr/local/lib/iridrivers) 
+
+IF (prada_INCLUDE_DIR AND prada_LIBRARY)
+    SET(prada_INCLUDE_DIRS ${prada_INCLUDE_DIR})
+    SET(prada_LIBRARIES ${prada_LIBRARY})
+
+    SET(prada_FOUND TRUE)
+ENDIF (prada_INCLUDE_DIR AND prada_LIBRARY)
+
+IF (prada_FOUND)
+    IF (NOT prada_FIND_QUIETLY)
+        MESSAGE(STATUS "Found prada: ${prada_LIBRARY}")
+    ENDIF (NOT prada_FIND_QUIETLY)
+ELSE (prada_FOUND)
+    IF (prada_FIND_REQUIRED)
+        MESSAGE(FATAL_ERROR "Could not find prada")
+    ENDIF (prada_FIND_REQUIRED)
+ENDIF (prada_FOUND)
+

ReadMe.txt

+This is libprada downloaded from 
+http://userpage.fu-berlin.de/tlang/prada/index.html
+
+Also has a patch applied to fix a important bug.
+A new release is expected to be released in a few months (now is april 2012)
+
+The building system has been changed to CMake so it can be properly imported in ROS.
+
+To install:
+$ cd build
+$ cmake ..
+$ make
+$ make install
+
+
+An example will be also compiled, but the config files links should be manually modified to make it work.
+
+
+ORIGINAL README:
+
+*** When using this library...
+
+please cite the paper:
+
+   Tobias Lang and Marc Toussaint
+   Planning with Noisy Probabilistic Relational Rules
+   Journal of Artificial Intelligence Research
+   2010, Volume 39, pages 1-49  
+
+please read the guide:
+
+   doc/guide.pdf
+
+
+*** GPL licence statement:
+
+    Copyright 2011 Tobias Lang
+    email: tobias.lang@fu-berlin.de
+
+    This file is part of libPRADA.
+
+    libPRADA is free software: you can redistribute it and/or modify
+    it under the terms of the GNU General Public License as published by
+    the Free Software Foundation, either version 3 of the License, or
+    (at your option) any later version.
+
+    libPRADA is distributed in the hope that it will be useful,
+    but WITHOUT ANY WARRANTY; without even the implied warranty of
+    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+    GNU General Public License for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with libPRADA.  If not, see <http://www.gnu.org/licenses/>
+

doc/doxygen.conf

+# Doxyfile 1.5.5
+
+@INCLUDE_PATH = ../doc/
+@INCLUDE = doxygen_project_name.conf
+
+#---------------------------------------------------------------------------
+# Project related configuration options
+#---------------------------------------------------------------------------
+DOXYFILE_ENCODING      = UTF-8
+PROJECT_NUMBER         = 
+OUTPUT_DIRECTORY       = ../doc
+CREATE_SUBDIRS         = NO
+OUTPUT_LANGUAGE        = English
+BRIEF_MEMBER_DESC      = YES
+REPEAT_BRIEF           = NO
+ABBREVIATE_BRIEF       = 
+ALWAYS_DETAILED_SEC    = NO
+INLINE_INHERITED_MEMB  = NO
+FULL_PATH_NAMES        = YES
+STRIP_FROM_PATH        = 
+STRIP_FROM_INC_PATH    = 
+SHORT_NAMES            = NO
+JAVADOC_AUTOBRIEF      = NO
+QT_AUTOBRIEF           = NO
+MULTILINE_CPP_IS_BRIEF = NO
+DETAILS_AT_TOP         = NO
+INHERIT_DOCS           = YES
+SEPARATE_MEMBER_PAGES  = NO
+TAB_SIZE               = 8
+ALIASES                = 
+OPTIMIZE_OUTPUT_FOR_C  = YES
+OPTIMIZE_OUTPUT_JAVA   = NO
+OPTIMIZE_FOR_FORTRAN   = NO
+OPTIMIZE_OUTPUT_VHDL   = NO
+BUILTIN_STL_SUPPORT    = NO
+CPP_CLI_SUPPORT        = NO
+SIP_SUPPORT            = NO
+DISTRIBUTE_GROUP_DOC   = NO
+SUBGROUPING            = YES
+TYPEDEF_HIDES_STRUCT   = NO
+#---------------------------------------------------------------------------
+# Build related configuration options
+#---------------------------------------------------------------------------
+EXTRACT_ALL            = NO
+EXTRACT_PRIVATE        = NO
+EXTRACT_STATIC         = NO
+EXTRACT_LOCAL_CLASSES  = YES
+EXTRACT_LOCAL_METHODS  = NO
+EXTRACT_ANON_NSPACES   = NO
+HIDE_UNDOC_MEMBERS     = NO
+HIDE_UNDOC_CLASSES     = NO
+HIDE_FRIEND_COMPOUNDS  = NO
+HIDE_IN_BODY_DOCS      = NO
+INTERNAL_DOCS          = NO
+CASE_SENSE_NAMES       = YES
+HIDE_SCOPE_NAMES       = NO
+SHOW_INCLUDE_FILES     = YES
+INLINE_INFO            = YES
+SORT_MEMBER_DOCS       = NO
+SORT_BRIEF_DOCS        = NO
+SORT_GROUP_NAMES       = NO
+SORT_BY_SCOPE_NAME     = NO
+GENERATE_TODOLIST      = YES
+GENERATE_TESTLIST      = YES
+GENERATE_BUGLIST       = YES
+GENERATE_DEPRECATEDLIST= YES
+ENABLED_SECTIONS       = 
+MAX_INITIALIZER_LINES  = 30
+SHOW_USED_FILES        = YES
+SHOW_DIRECTORIES       = YES
+FILE_VERSION_FILTER    = 
+#---------------------------------------------------------------------------
+# configuration options related to warning and progress messages
+#---------------------------------------------------------------------------
+QUIET                  = YES
+WARNINGS               = YES
+WARN_IF_UNDOCUMENTED   = YES
+WARN_IF_DOC_ERROR      = YES
+WARN_NO_PARAMDOC       = NO
+WARN_FORMAT            = "$file:$line: $text"
+WARN_LOGFILE           = 
+#---------------------------------------------------------------------------
+# configuration options related to the input files
+#---------------------------------------------------------------------------
+INPUT                  = ../src \
+                         ../doc/main.dox
+INPUT_ENCODING         = UTF-8
+FILE_PATTERNS          = *.c \
+                         *.h \
+                         *.cpp
+RECURSIVE              = YES
+EXCLUDE                = 
+EXCLUDE_SYMLINKS       = NO
+EXCLUDE_PATTERNS       = *.tab.c \
+                         *.tab.h \
+                         lex* \
+                         *glr.h \
+                         *llr.h \
+                         *glr.c \
+                         *llr.c \
+                         *general.h
+EXCLUDE_SYMBOLS        = 
+EXAMPLE_PATH           = ../src/examples
+EXAMPLE_PATTERNS       = 
+EXAMPLE_RECURSIVE      = NO
+IMAGE_PATH             = ../doc/images
+INPUT_FILTER           = 
+FILTER_PATTERNS        = 
+FILTER_SOURCE_FILES    = NO
+#---------------------------------------------------------------------------
+# configuration options related to source browsing
+#---------------------------------------------------------------------------
+SOURCE_BROWSER         = YES
+INLINE_SOURCES         = NO
+STRIP_CODE_COMMENTS    = YES
+REFERENCED_BY_RELATION = YES
+REFERENCES_RELATION    = YES
+REFERENCES_LINK_SOURCE = YES
+USE_HTAGS              = NO
+VERBATIM_HEADERS       = YES
+#---------------------------------------------------------------------------
+# configuration options related to the alphabetical class index
+#---------------------------------------------------------------------------
+ALPHABETICAL_INDEX     = YES
+COLS_IN_ALPHA_INDEX    = 5
+IGNORE_PREFIX          = 
+#---------------------------------------------------------------------------
+# configuration options related to the HTML output
+#---------------------------------------------------------------------------
+GENERATE_HTML          = YES
+HTML_OUTPUT            = html
+HTML_FILE_EXTENSION    = .html
+HTML_HEADER            = 
+HTML_FOOTER            = 
+HTML_STYLESHEET        = 
+HTML_ALIGN_MEMBERS     = YES
+GENERATE_HTMLHELP      = NO
+GENERATE_DOCSET        = NO
+DOCSET_FEEDNAME        = "Doxygen generated docs"
+DOCSET_BUNDLE_ID       = org.doxygen.Project
+HTML_DYNAMIC_SECTIONS  = NO
+CHM_FILE               = 
+HHC_LOCATION           = 
+GENERATE_CHI           = NO
+BINARY_TOC             = NO
+TOC_EXPAND             = NO
+DISABLE_INDEX          = NO
+ENUM_VALUES_PER_LINE   = 4
+GENERATE_TREEVIEW      = NO
+TREEVIEW_WIDTH         = 250
+#---------------------------------------------------------------------------
+# configuration options related to the LaTeX output
+#---------------------------------------------------------------------------
+GENERATE_LATEX         = NO
+LATEX_OUTPUT           = latex
+LATEX_CMD_NAME         = latex
+MAKEINDEX_CMD_NAME     = makeindex
+COMPACT_LATEX          = NO
+PAPER_TYPE             = a4
+EXTRA_PACKAGES         = 
+LATEX_HEADER           = 
+PDF_HYPERLINKS         = YES
+USE_PDFLATEX           = NO
+LATEX_BATCHMODE        = NO
+LATEX_HIDE_INDICES     = NO
+#---------------------------------------------------------------------------
+# configuration options related to the RTF output
+#---------------------------------------------------------------------------
+GENERATE_RTF           = NO
+RTF_OUTPUT             = rtf
+COMPACT_RTF            = NO
+RTF_HYPERLINKS         = NO
+RTF_STYLESHEET_FILE    = 
+RTF_EXTENSIONS_FILE    = 
+#---------------------------------------------------------------------------
+# configuration options related to the man page output
+#---------------------------------------------------------------------------
+GENERATE_MAN           = NO
+MAN_OUTPUT             = man
+MAN_EXTENSION          = .3
+MAN_LINKS              = NO
+#---------------------------------------------------------------------------
+# configuration options related to the XML output
+#---------------------------------------------------------------------------
+GENERATE_XML           = NO
+XML_OUTPUT             = xml
+XML_SCHEMA             = 
+XML_DTD                = 
+XML_PROGRAMLISTING     = YES
+#---------------------------------------------------------------------------
+# configuration options for the AutoGen Definitions output
+#---------------------------------------------------------------------------
+GENERATE_AUTOGEN_DEF   = NO
+#---------------------------------------------------------------------------
+# configuration options related to the Perl module output
+#---------------------------------------------------------------------------
+GENERATE_PERLMOD       = NO
+PERLMOD_LATEX          = NO
+PERLMOD_PRETTY         = YES
+PERLMOD_MAKEVAR_PREFIX = 
+#---------------------------------------------------------------------------
+# Configuration options related to the preprocessor   
+#---------------------------------------------------------------------------
+ENABLE_PREPROCESSING   = YES
+MACRO_EXPANSION        = NO
+EXPAND_ONLY_PREDEF     = NO
+SEARCH_INCLUDES        = YES
+INCLUDE_PATH           = 
+INCLUDE_FILE_PATTERNS  = 
+PREDEFINED             = _USE_MPI=1
+EXPAND_AS_DEFINED      = 
+SKIP_FUNCTION_MACROS   = YES
+#---------------------------------------------------------------------------
+# Configuration::additions related to external references   
+#---------------------------------------------------------------------------
+TAGFILES               = 
+GENERATE_TAGFILE       = 
+ALLEXTERNALS           = NO
+EXTERNAL_GROUPS        = YES
+PERL_PATH              = /usr/bin/perl
+#---------------------------------------------------------------------------
+# Configuration options related to the dot tool   
+#---------------------------------------------------------------------------
+CLASS_DIAGRAMS         = YES
+MSCGEN_PATH            = 
+HIDE_UNDOC_RELATIONS   = YES
+HAVE_DOT               = YES
+CLASS_GRAPH            = YES
+COLLABORATION_GRAPH    = YES
+GROUP_GRAPHS           = YES
+UML_LOOK               = NO
+TEMPLATE_RELATIONS     = NO
+INCLUDE_GRAPH          = NO
+INCLUDED_BY_GRAPH      = NO
+CALL_GRAPH             = YES
+CALLER_GRAPH           = YES
+GRAPHICAL_HIERARCHY    = YES
+DIRECTORY_GRAPH        = NO
+DOT_IMAGE_FORMAT       = png
+DOT_PATH               = 
+DOTFILE_DIRS           = 
+DOT_GRAPH_MAX_NODES    = 50
+MAX_DOT_GRAPH_DEPTH    = 2
+DOT_TRANSPARENT        = YES
+DOT_MULTI_TARGETS      = NO
+GENERATE_LEGEND        = YES
+DOT_CLEANUP            = YES
+#---------------------------------------------------------------------------
+# Configuration::additions related to the search engine   
+#---------------------------------------------------------------------------
+SEARCHENGINE           = NO

doc/doxygen_project_name.conf

+PROJECT_NAME = "libprada"

doc/main.dox

+/*! \mainpage libprada
+
+  \section Introduction 
+
+  \subsection Pre-Requisites
+
+  This package requires of the following libraries and packages
+	 - <A href="http://www.cmake.org">cmake</A>, a cross-platform build system.
+	 - <A href="http://www.doxygen.org">doxygen</a> and 
+	   <A href="http://www.graphviz.org">graphviz</a> to generate the documentation.
+         - stdc++, 
+	 .
+  
+  Under linux all of these utilities are available in ready-to-use packages.
+
+  Under MacOS most of the packages are available via <a href="http://www.finkproject.org/">fink</a>. <br>
+
+  \subsection Compilation
+
+  Just download this package, uncompress it, and execute
+   - cd build
+   - cmake ..
+   .
+  to generate the makefile and then
+   - make
+   .
+  to obtain the shared library (in this case called <em>iriutils.so</em>) and
+  also all the example programs.
+
+  The <em>cmake</em> only need to be executed once (make will automatically call
+  <em>cmake</em> if you modify one of the <em>CMakeList.txt</em> files).
+
+  To generate this documentation type
+       - make doc
+       .
+
+  The files in the <em>build</em> directory are genetated by <em>cmake</em>
+  and <em>make</em> and can be safely removed.
+  After doing so you will need to call cmake manually again.
+
+  \subsection Configuration
+
+  The default build mode is DEBUG. That is, objects and executables 
+  include debug information.
+
+  The RELEASE build mode optimizes for speed. To build in this mode
+  execute
+      - cmake .. -DCMAKE_BUILD_TYPE=RELEASE
+      .
+  The release mode will be kept until next time cmake is executed.
+
+  \subsection Installation
+
+  In order to be able to use the library, it it necessary to copy it into the system.
+  To do that, execute
+
+      - make install
+      .
+
+  as root and the shared libraries will be copied to <em>/usr/local/lib/iriutils</em> directory
+  and the header files will be copied to <em>/usr/local/include/iriutils</em> dierctory. At 
+  this point, the library may be used by any user.
+
+  To remove the library from the system, exceute
+      - make uninstall
+      .
+  as root, and all the associated files will be removed from the system.
+
+  \section Customization
+
+  To build a new application using these library, first it is necessary to locate if the library
+  has been installed or not using the following command
+
+      - FIND_PACKAGE(prada REQUIRED)
+
+  In the case that the package is present, it is necessary to add the header files directory to
+  the include directory path by using
+
+      - INCLUDE_DIRECTORIES(${prada_INCLUDE_DIR})
+
+  Finally, it is also nevessary to link with the desired libraries by using the following command
+
+      - TARGET_LINK_LIBRARIES(<executable name> ${prada_LIBRARY})
+      .
+
+  \section License
+
+  This package is licensed under a  
+  <a href="http://www.gnu.org/licenses/lgpl.html">
+    LGPL 3.0 License</a>.
+
+  \section Disclaimer
+
+   This is free software: you can redistribute it and/or modify
+   it under the terms of the GNU Lesser General Public License as published by
+   the Free Software Foundation, either version 3 of the License, or
+   at your option) any later version.
+
+   This program is distributed in the hope that it will be useful,
+   but WITHOUT ANY WARRANTY; without even the implied warranty of
+   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+   GNU Lesser General Public License for more details.
+
+   You should have received a copy of the GNU Lesser General Public License
+   along with this program.  If not, see <http://www.gnu.org/licenses/>. 
+
+ */

include/CMakeLists.txt

+
+# application header files
+SET(headers_mt MT/array.h MT/util.h MT/util_t.cxx MT/array_t.cxx)
+#SET(headers_relational relational/logicDefinitions.h relational/logicObjectDatabase.h relational/logicObjectManager.h relational/logicReasoning.h relational/plan.h relational/prada.h relational/ruleLearner.h relational/ruleReasoning.h relational/utilTL.h)
+file(GLOB headers_relational
+    "relational/*.h"
+)
+
+INSTALL(FILES ${headers_mt} DESTINATION include/libprada/MT)
+INSTALL(FILES ${headers_relational} DESTINATION include/libprada/relational)
+

include/MT/array_instantiate.cxx

+/*  Copyright 2009 Marc Toussaint
+    email: mtoussai@cs.tu-berlin.de
+
+    This program is free software: you can redistribute it and/or modify
+    it under the terms of the GNU General Public License as published by
+    the Free Software Foundation, either version 3 of the License, or
+    (at your option) any later version.
+
+    This program is distributed in the hope that it will be useful,
+    but WITHOUT ANY WARRANTY; without even the implied warranty of
+    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+    GNU General Public License for more details.
+
+    You should have received a COPYING file of the GNU General Public License
+    along with this program. If not, see <http://www.gnu.org/licenses/> */
+
+// this requires T to be defined!!!
+
+template class MT::Array<T>;
+
+template MT::Array<T> MT::operator~(const Array<T>& y);
+template MT::Array<T> MT::operator-(const Array<T>& y, const Array<T>& z);
+#ifndef NOFLOAT
+template MT::Array<T> MT::operator*(const Array<T>& y, const Array<T>& z);
+#endif
+template MT::Array<T> MT::operator^(const Array<T>& y, const Array<T>& z);
+template MT::Array<T> MT::operator%(const Array<T>& y, const Array<T>& z);
+template MT::Array<T> MT::operator*(T, const Array<T>& z);
+template MT::Array<T> MT::operator*(const Array<T>& z, T);
+template MT::Array<T> MT::operator-(const Array<T>& z);
+template MT::Array<T> MT::operator-(T, const Array<T>& z);
+template MT::Array<T> MT::operator-(const Array<T>& z, T);
+template MT::Array<T> MT::operator+(const Array<T>& y, const Array<T>& z);
+template MT::Array<T> MT::operator+(T, const Array<T>& z);
+template MT::Array<T>& MT::operator+=(Array<T>& y, T);
+template MT::Array<T>& MT::operator+=(Array<T>& y, const Array<T>& z);
+template MT::Array<T>& MT::operator-=(Array<T>& y, T);
+template MT::Array<T>& MT::operator-=(Array<T>& y, const Array<T>& z);
+template MT::Array<T>& MT::operator*=(Array<T>& y, T);
+template MT::Array<T>& MT::operator/=(Array<T>& y, T);
+template bool operator==(const MT::Array<T>& v, const MT::Array<T>& w);
+template bool operator==(const MT::Array<T>& v, const T *w);
+template std::istream& operator>>(std::istream& is, MT::Array<T>& x);
+template std::ostream& operator<<(std::ostream& os, const MT::Array<T>& x);
+
+//BinaryOperation
+template MT::Array<T>& mult(MT::Array<T>& x, const MT::Array<T>& y, const MT::Array<T>& z);
+
+template void transpose(MT::Array<T>& x, const MT::Array<T>& y);
+template void inverse2d(MT::Array<T>& invA, const MT::Array<T>& A);
+
+template T entropy(const MT::Array<T>& v);
+template T normalizeDist(MT::Array<T>& v);
+template void makeConditional(MT::Array<T>& P);
+template void checkNormalization(MT::Array<T>& v, double tol);
+template void eliminate(MT::Array<T>& x, const MT::Array<T>& y, uint d);
+template void eliminate(MT::Array<T>& x, const MT::Array<T>& y, uint d, uint e);
+template void eliminatePartial(MT::Array<T>& x, const MT::Array<T>& y, uint d);
+template void checkNan(MT::Array<T> const&);
+
+template T sqrDistance(const MT::Array<T>& v, const MT::Array<T>& w);
+template T maxDiff(const MT::Array<T>& v, const MT::Array<T>& w, uint *im);
+template T maxRelDiff(const MT::Array<T>& v, const MT::Array<T>& w, T tol);
+//template T sqrDistance(const MT::Array<T>& v, const MT::Array<T>& w, const MT::Array<bool>& mask);
+template T sqrDistance(const MT::Array<T>& g, const MT::Array<T>& v, const MT::Array<T>& w);
+template T euclideanDistance(const MT::Array<T>& v, const MT::Array<T>& w);
+template T metricDistance(const MT::Array<T>& g, const MT::Array<T>& v, const MT::Array<T>& w);
+
+template T sum(const MT::Array<T>& v);
+template MT::Array<T> sum(const MT::Array<T>& v, uint d);
+template T sumOfAbs(const MT::Array<T>& v);
+template T sumOfSqr(const MT::Array<T>& v);
+template T norm(const MT::Array<T>& v);
+template T mean(const MT::Array<T>& v);
+
+template T var(const MT::Array<T>& v);
+template T trace(const MT::Array<T>& v);
+
+template MT::Array<T> log(const MT::Array<T>& v);
+template MT::Array<T> exp(const MT::Array<T>& v);
+template MT::Array<T> atan(const MT::Array<T>& v);
+
+template T minDiag(const MT::Array<T>& v);
+
+template T product(const MT::Array<T>& v);
+#ifndef NOFLOAT
+template void innerProduct(MT::Array<T>& x, const MT::Array<T>& y, const MT::Array<T>& z);
+#endif
+template void outerProduct(MT::Array<T>& x, const MT::Array<T>& y, const MT::Array<T>& z);
+template T scalarProduct(const MT::Array<T>& v, const MT::Array<T>& w);
+template T scalarProduct(const MT::Array<T>& g, const MT::Array<T>& v, const MT::Array<T>& w);
+
+template MT::Array<T> catCol(const MT::Array<MT::Array<T>* >& X);
+
+
+template void tensorEquation(MT::Array<T> &X, const MT::Array<T> &A, const uintA &pickA, const MT::Array<T> &B, const uintA &pickB, uint sum);
+template void tensorPermutation(MT::Array<T> &Y, const MT::Array<T> &X, const uintA &Yid);
+template void tensorMarginal(MT::Array<T> &Y, const MT::Array<T> &X, const MT::Array<uint> &Yid);
+template void tensorMaxMarginal(MT::Array<T> &Y, const MT::Array<T> &X, const MT::Array<uint> &Yid);
+template void tensorMarginal_old(MT::Array<T> &y, const MT::Array<T> &x, const MT::Array<uint> &xd, const MT::Array<uint> &ids);
+template void tensorMultiply(MT::Array<T> &X, const MT::Array<T> &Y, const MT::Array<uint> &Yid);
+template void tensorMultiply_old(MT::Array<T> &x, const MT::Array<T> &y, const MT::Array<uint> &d, const MT::Array<uint> &ids);
+
+template void rndInteger(MT::Array<T>& a, int low, int high, bool add);
+template void rndUniform(MT::Array<T>& a, double low, double high, bool add);
+template void rndGauss(MT::Array<T>& a, double stdDev, bool add);
+//template void rndGauss(MT::Array<T>& a, bool add);
+//template MT::Array<T>& rndGauss(double stdDev, uint dim);
+template uint softMax(const MT::Array<T>& a, MT::Array<double>& soft, double beta);
+
+
+#undef T